SequenceAnnotation DRAFT Profile
Version: 0.7-DRAFT (21 November 2022)
If you spot any errors or omissions with this type, please file an issue in our GitHub.
| Group | Use Cases | Cross Walk | Task & Issues | Examples | Live Deploys |
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| Proteins |
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You can read the release version of this specification here.
Key to specification table
- Green properties/types are proposed by Bioschemas, or indicate proposed changes by Bioschemas to Schema.org
- Red properties/types exist in the core of Schema.org
- Blue properties/types exist in the pending area of Schema.org
- Black properties/types are reused from external vocabularies/ontologies
CD = Cardinality
| Property | Expected Type | Description | CD | Controlled Vocabulary | Example |
|---|---|---|---|---|---|
| Marginality: Minimum. | |||||
| @context | URL | Used to provide the context (namespaces) for the JSON-LD file. Not needed in other serialisations. |
ONE | ||
| @type | Text | Schema.org/Bioschemas class for the resource declared using JSON-LD syntax. For other serialisations please use the appropriate mechanism. While it is permissible to provide multiple types, it is preferred to use a single type. |
MANY | Schema.org, Bioschemas | |
| @id | IRI | Used to distinguish the resource being described in JSON-LD. For other serialisations use the appropriate approach. | ONE | ||
| dct:conformsTo | IRI | Used to state the Bioschemas profile that the markup relates to. The versioned URL of the profile must be used. Note that we use a CURIE in the table here but the full URL for Dublin Core terms must be used in the markup (http://purl.org/dc/terms/conformsTo), see example. |
ONE | Bioschemas profile versioned URL | |
| sequenceLocation |
SequenceRange |
Schema: A range/position location where this annotation or BioChemEntity is located reagrding another BioChemEntity, for instance a BioChemStructure in a Protein. |
MANY | ||
| Marginality: Recommended. | |||||
| creationMethod |
PropertyValue Text URL |
Schema: Method used to create or obtain this annotation or BioChemEntity; please use PropertyValue if you want to include any evidence. |
ONE | ||
| description |
Text |
Schema: A description of the item. |
ONE | ||
| image |
ImageObject URL |
Schema: An image of the item. This can be a [[URL]] or a fully described [[ImageObject]]. |
MANY | ||
| name |
Text |
Schema: The name of the item. |
ONE | ||
| sameAs |
URL |
Schema: URL of a reference Web page that unambiguously indicates the item’s identity. E.g. the URL of the item’s Wikipedia page, Wikidata entry, or official website. |
MANY | ||
| sequenceOrientation |
Integer |
Schema: One of 1, 0 or -1. |
ONE | ||
| sequenceValue |
Text URL |
Schema: value of the sequence |
ONE | ||
| url |
URL |
Schema: URL of the item. |
ONE | ||
| Marginality: Optional. | |||||
| alternateName |
Text |
Schema: An alias for the item. |
MANY | ||
| hasBioChemEntityPart |
BioChemEntity |
Schema: Indicates a BioChemEntity that (in some sense) has this BioChemEntity as a part. Inverse property: isPartOfBioChemEntity |
MANY | ||
| hasRepresentation |
PropertyValue Text URL |
Schema: A common representation such as a protein sequence or chemical structure for this entity. For images use schema.org/image. |
MANY | ||
| isLocatedInSubcellularLocation |
DefinedTerm Propertyvalue URL |
Schema: Subcellular location where this BioChemEntity is located; please use PropertyValue if you want to include any evidence. |
MANY | ||
| isPartOfBioChemEntity |
BioChemEntity URL |
Schema: Indicates a BioChemEntity that is (in some sense) a part of this BioChemEntity. Inverse property: hasBioChemEntityPart |
MANY | ||
| valueReference |
PropertyValue Text URL |
Schema: A pointer to a secondary value that provides additional information on the original value, e.g. a reference temperature. |
ONE | ||